species:   Rhsol
pid:       PID0518
parent:    Rhi-milR-43
paralog:   
locus:     KB317711.1:436320-436408
matures:   ['CAGAGUGGAUUUGUAUUGCU', 'CAAUAUUAUCCAUCUGCC']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317711.1:436320-436408

5 out of bounds
15 alignments
15 proper strand
14 stranded perfect matches

      *************************              **************************************      
UUGUGGGUUGCAGAGUGGAUUUGUAUUGCUUUUUUUUGCAUAUUGUUGCAAUAUUAUCCAUCUGCCCUUUUUAAUUAGUCUUCCCAAAC
...((((..(((((.(((((..(((((((..................))))))).)))))))))).................))))...
----------CAGAGUGGAUUUGUAUUGCU----------------------------------------------------------- l=20 a=0 c
------------------------------------------------CAAUAUUAUCCAUCUGCC----------------------- l=18 a=0 c*
--------UGCAGAGUGGAUUUGUAUUGCUU---------------------------------------------------------- l=23 a=4 ma
-----------------------------------------------GCAAUAUUAUCCAUCUGCCCUUUUUAAUUAGUCUUC------ l=36 a=0 ma*

---------GCAGAGUGGAUUUGUAUUGCU----------------------------------------------------------- l=21 a=4 
---------GCAGAGUGGcUUUGUAUUGCU----------------------------------------------------------- l=21 a=1 
---------GCAGAGUGGAUUUGUAUUGCUU---------------------------------------------------------- l=22 a=1 
--------UGCAGAGUGGAUUUGUAUUGCU----------------------------------------------------------- l=22 a=1 
--------UGCAGAGUGGAUUUGUAUUGCUU---------------------------------------------------------- l=23 a=4 (ma)
--------UGCAGAGUGGAUUUGUAUUGCUUU--------------------------------------------------------- l=24 a=1 
------GUUGCAGAGUGGAUUUGUAUUGCUUU--------------------------------------------------------- l=26 a=1 
---UGGGUUGCAGAGUGGAUUUGUAUUGCU----------------------------------------------------------- l=27 a=1 
-UGUGGGUUGCAGAGUGGAUUUGUAUUG------------------------------------------------------------- l=27 a=1 

mb-00010
ax-1001011
ku-01
ss-101111101010
fn-111
